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NBT.itemStackFromNBT and the related methods (it will assume the NBT is 1.20.4 data, otherwise upgrade the NBT before yourself with the Datafixer)Due to Mojang changes to how ItemStacks work at runtime, vanilla NBT won't be visible on loaded ItemStacks in 1.20.5+ anymore. So modifying vanilla data will not work anymore in the same way as for 1.8-1.20.4, and all plugins need to be updated to be aware of that. If in doubt, feel free to ask on Discord.
Full Changelog: https://github.com/tr7zw/Item-NBT-API/compare/2.12.3...2.12.4